PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041562.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 264aa    MW: 30397.1 Da    PI: 9.1939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041562.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.61e-35161521128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                  +p+G+rF+Ptdeelv +yL +kv++ +l++ ++i+e+d+++++Pw Lp  v   +++ yfF +++ +++ g +++ra+  gyWk  gk+k+++++  +
  Pbr041562.1  16 MPVGYRFRPTDEELVIHYLMRKVHAAPLPA-SIIPEFDVFETHPWGLPGDV---REKRYFFYNENMNKNVGINSRRAAGCGYWKPIGKKKQIVNNseS 109
                  699***************************.89***************554...3467888888888889***********************98767 PP

          NAM  97 gelvglkktLvfy...........kgrapkgektdWvmheyrl 128
                  +e+vg++ktLvf            + ++ ++++t+W+mheyrl
  Pbr041562.1 110 NEAVGIRKTLVFCerkrrrchhhhHRSTDTSTQTRWLMHEYRL 152
                  778**********7766666555435666778*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-4310178IPR003441NAC domain
PROSITE profilePS5100542.31816178IPR003441NAC domain
PfamPF023655.1E-2317152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MENIRENYVI NGGVKMPVGY RFRPTDEELV IHYLMRKVHA APLPASIIPE FDVFETHPWG  60
LPGDVREKRY FFYNENMNKN VGINSRRAAG CGYWKPIGKK KQIVNNSESN EAVGIRKTLV  120
FCERKRRRCH HHHHRSTDTS TQTRWLMHEY RLLASQANPT QVLEKESGNW VVCRIFQKKR  180
RPTQRTSDDM GVVSQRSSNC NKTRRLMGDY ISADDHSRRS DPDLTTLSSP SCSSDITREF  240
SSNDNGELDD DQEGHSVSMP INI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-261417915166NO APICAL MERISTEM PROTEIN
1ut4_B3e-261417915166NO APICAL MERISTEM PROTEIN
1ut7_A3e-261417915166NO APICAL MERISTEM PROTEIN
1ut7_B3e-261417915166NO APICAL MERISTEM PROTEIN
4dul_A3e-261417915166NAC domain-containing protein 19
4dul_B3e-261417915166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123127RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346804.10.0PREDICTED: NAC transcription factor 25-like
TrEMBLD9ZJA61e-180D9ZJA6_MALDO; NAC domain class transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-47NAC domain containing protein 83